Keywords Search
| You could select a set of locus with a keyword search throught features annotations. Moreover, all the linked FST inside or in the promoter region of the selected genes are displayed. The search is case insensitive. | |||
Locus Name Search
| Locus Name Search allows to retrieve a FSTs with a gene list . Moreover, all the linked FST inside or in the promoter region of the selected genes are displayed. | |||
Interpro Domain Search
| Locus are selected according to one or more Interpro domains. The type of flanking insertion elements, the gene region of insertion and the gene orientation can be used to restrict the search. | |||
BLAST Search
| FSTs search in a specific gene can also be done by blasting the Oryza sativa or Arabidopsis thaliana genome with a query sequence. You can cut and paste, or type a sequence into the large text window, or upload a file containing a valid nucleotide or protein sequence in fasta format, from your computer. | |||
Primer Blaster
| Primer Blaster can be used thereafter to check primers specificity and visualize the targeted region that will be amplified. | |||
Primer Designer
| Primer Designer is an automatic tool developed to generate primers for FST validation. Users can choice FST, length of amplicon but also to exclude any restriction enzyme in the amplicon. PrimerDesigner help users to design a probe for southern in order to check if a T-DNA is really present or not in the ordered line. | |
Get Sequence
| This tool allow to select any genomic sequence by choosing a chromosome number and two coordinates (relative to the top of the chromosome), and display all the genes predicted in the selected region. |
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