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Oryza Tag Line
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Oryza sativa ssp. japonica
Arabidopsis thaliana
Sorghum bicolor
Oryza sativa ssp. indica
Input
Paste sequence(s)
Or upload a file
Filter
Program
--
Database
--
Expect
Number of alignment
Flanking Sequence Tag
All FSTs
Only T-DNA
Only Tos17
Only Ac/Ds
Nothing
Region
All
Promoter
Gene
3' UTR
Orientation
All
Reverse
Forward
Output
FASTA file
1000 bp upstream genomic sequences (lower case) from the translational start codons (upper case).
Gene sequences from MSU V7 release, including exons, introns and upstream/downstream untranslated regions
CDS sequences from MSU V7 release. Does not include intron sequences or UTRs.(ie Coding sequence only)
Translated protein sequences from MSU V7 release
Input
Paste sequence(s)
Filter
Program
--
Database
--
Expect
Number of alignment
Output
FASTA file
CDS sequences. Does not include intron sequences or UTRs.
Translated protein sequences.
Input
Paste sequence(s)
Or upload a file
Filter
Program
--
Database
--
Expect
Number of alignment
Flanking Sequence Tag
All FSTs
Only T-DNA
Only Tos17
Only Ac/Ds
Nothing
Region
All
Promoter
Gene
3' UTR
Orientation
All
Reverse
Forward
Output
FASTA file
1000 bp of sequence preceding the 5' end of each transcription unit.
Gene sequences from TAIR10 release, including UTRs and introns.
CDS sequences from TAIR10 release. Does not include intron sequences or UTRs.
Translated protein sequences from TAIR10 release
1000 bp of sequence following the 3' end of each locus.
Input
Paste sequence(s)
Filter
Program
--
Database
--
Expect
Number of alignment
Output
FASTA file
Gene sequences.
CDS sequences. Does not include intron sequences or UTRs.
Translated protein sequences.
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