Example : WRKY

Search Text
Filter
Flanking Sequence Tag	All FSTs	Only T-DNA	Only Tos17	Only Ac/Ds	Nothing
Region	All	Promoter	Gene	3' UTR
Orientation	All	Reverse	Forward
Output
FASTA file	Gene sequences from MSU V7 release, including exons, introns and upstream/downstream untranslated regions
	CDS sequences from MSU V7 release. Does not include intron sequences or UTRs.(ie Coding sequence only)
	Translated protein sequences from MSU V7 release

Example : Os01g10900.1

Input
Paste your gene list
Or upload a file
Filter
Flanking Sequence Tag	All FSTs	Only T-DNA	Only Tos17	Only Ac/Ds	Nothing
Region	All	Promoter	Gene	3' UTR
Orientation	All	Reverse	Forward
Output
FASTA file	Gene sequences from MSU V7 release, including exons, introns and upstream/downstream untranslated regions
	CDS sequences from MSU V7 release. Does not include intron sequences or UTRs.(ie Coding sequence only)
	Translated protein sequences from MSU V7 release

Example : IPR000009

Entry an Interpro domain
Filter
Flanking Sequence Tag	All FSTs	Only T-DNA	Only Tos17	Only Ac/Ds	Nothing
Region	All	Promoter	Gene	3' UTR
Orientation	All	Reverse	Forward
Output
FASTA file	Gene sequences from MSU V7 release, including exons, introns and upstream/downstream untranslated regions
	CDS sequences from MSU V7 release. Does not include intron sequences or UTRs.(ie Coding sequence only)
	Translated protein sequences from MSU V7 release

Example : histidine

Entry an Gene Ontology term
Filter
Flanking Sequence Tag	All FSTs	Only T-DNA	Only Tos17	Only Ac/Ds	Nothing
Region	All	Promoter	Gene	3' UTR
Orientation	All	Reverse	Forward
Output
FASTA file	Gene sequences from MSU V7 release, including exons, introns and upstream/downstream untranslated regions
	CDS sequences from MSU V7 release. Does not include intron sequences or UTRs.(ie Coding sequence only)
	Translated protein sequences from MSU V7 release

Primer Designer

Primer Blaster

Get Sequences

This program was developed to help users make primers specific to a PCR template. Its combines Primer3 and a specificity check via a BLAST search against Oryza sativa genome.
You just have to cut and paste your FST or plant ID and specify primer parameter.

Input :
Paste your list For example : SAO6B07

General Primer Picking Conditions :
Primer GC%	Min.   Opt.   Max.	Pair Max Mispriming:
Primer Size	Min.   Opt.   Max.	Max 3' Stability:
Primer Tm	Min.   Opt.   Max.	Max Poly-X:
Primer sets:		Max Self Complementarity:
Product size range:		Max 3' Self Complementarity: